Variant report

Variant	rs10979080
Chromosome Location	chr9:110641360-110641361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10115778	0.95[ASN][1000 genomes]
rs10816583	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10979081	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979086	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12552179	0.87[ASN][1000 genomes]
rs13298965	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4509400	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7021395	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7036874	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037236	0.94[ASN][1000 genomes]
rs7045461	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110635800-110656800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110638600-110642200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:110638800-110642200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:110638800-110642400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:110639000-110642200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:110639000-110642200	Weak transcription	Osteobl	bone
7	chr9:110640000-110641800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110640200-110641400	Enhancers	Primary B cells from cord blood	blood
9	chr9:110640200-110641800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:110640600-110641600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:110641200-110645400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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