Variant report

Variant	rs10129402
Chromosome Location	chr14:68318622-68318623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68317031..68319960-chr14:68326091..68328593,2	K562	blood:
2	chr14:68315642..68318719-chr14:68330973..68334711,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10148493	1.00[AMR][1000 genomes]
rs10148929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150303	1.00[AMR][1000 genomes]
rs11625247	1.00[AMR][1000 genomes]
rs12435419	1.00[AMR][1000 genomes]
rs12882546	1.00[AMR][1000 genomes]
rs12894770	1.00[AMR][1000 genomes]
rs1474796	1.00[AMR][1000 genomes]
rs1535088	1.00[AMR][1000 genomes]
rs1955467	1.00[AMR][1000 genomes]
rs1955471	1.00[AMR][1000 genomes]
rs2092691	1.00[AMR][1000 genomes]
rs2320028	1.00[AMR][1000 genomes]
rs4899223	1.00[AMR][1000 genomes]
rs4902513	1.00[AMR][1000 genomes]
rs6573798	1.00[AMR][1000 genomes]
rs7143260	1.00[AMR][1000 genomes]
rs7147365	1.00[AMR][1000 genomes]
rs7147404	1.00[AMR][1000 genomes]
rs7157923	1.00[AMR][1000 genomes]
rs7159735	1.00[AMR][1000 genomes]
rs8006137	1.00[AMR][1000 genomes]
rs8011138	1.00[AMR][1000 genomes]
rs8017085	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:68313200-68324400	Weak transcription	Gastric	stomach
5	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
6	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
8	chr14:68313400-68322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:68313800-68320600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:68313800-68324600	Weak transcription	Esophagus	oesophagus
11	chr14:68314000-68331400	Weak transcription	Dnd41	blood
12	chr14:68315800-68318800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:68316600-68319000	Enhancers	Placenta	Placenta
14	chr14:68316600-68321600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:68316800-68319800	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:68316800-68321400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr14:68317000-68320200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:68317600-68319200	Enhancers	Fetal Thymus	thymus
19	chr14:68317600-68324800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:68317800-68319200	Enhancers	Fetal Muscle Trunk	muscle
21	chr14:68317800-68319200	Enhancers	Spleen	Spleen
22	chr14:68317800-68320800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68317800-68322800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:68318000-68319000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr14:68318000-68321200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr14:68318200-68319000	Enhancers	Ovary	ovary
27	chr14:68318200-68319200	Enhancers	Fetal Muscle Leg	muscle
28	chr14:68318200-68320200	Enhancers	GM12878-XiMat	blood
29	chr14:68318400-68318800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:68318400-68319200	Strong transcription	Fetal Intestine Small	intestine
31	chr14:68318600-68319200	Genic enhancers	Fetal Stomach	stomach
32	chr14:68318600-68319800	Weak transcription	Thymus	Thymus
33	chr14:68318600-68334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links