Variant report

Variant	rs4902513
Chromosome Location	chr14:68184650-68184651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr14:68184303-68184670	HepG2	liver:	n/a	n/a
2	FOXA1	chr14:68184266-68184948	HepG2	liver:	n/a	chr14:68184735-68184747

Variant related genes	Relation type
RDH12	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129402	1.00[AMR][1000 genomes]
rs10148493	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148929	1.00[AMR][1000 genomes]
rs10150303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11625247	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12435419	1.00[AMR][1000 genomes]
rs12882546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12894770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474796	0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1535088	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955471	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2320028	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899223	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902505	0.96[AFR][1000 genomes]
rs4902515	0.81[AFR][1000 genomes]
rs6573798	1.00[AMR][1000 genomes]
rs7143260	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157923	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159735	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006137	1.00[AMR][1000 genomes]
rs8011138	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017085	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017290	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68182600-68186600	Weak transcription	Hela-S3	cervix
2	chr14:68182600-68187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:68183000-68184800	Enhancers	HepG2	liver
4	chr14:68184000-68185000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:68184000-68185400	Enhancers	Psoas Muscle	Psoas
6	chr14:68184600-68188600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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