Variant report

Variant	rs1955471
Chromosome Location	chr14:68163624-68163625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68085007..68087641-chr14:68161734..68163830,3	MCF-7	breast:
2	chr14:68153591..68158250-chr14:68160092..68166006,8	K562	blood:
3	chr14:68083940..68087212-chr14:68160289..68163699,4	K562	blood:
4	chr14:68139847..68143415-chr14:68157981..68164641,9	K562	blood:
5	chr14:68139320..68145896-chr14:68154797..68164104,19	MCF-7	breast:
6	chr14:68152032..68159100-chr14:68160764..68163993,10	K562	blood:
7	chr14:68084183..68087028-chr14:68160218..68163936,5	MCF-7	breast:
8	chr14:68138842..68143559-chr14:68155519..68164066,22	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RDH11-1	chr14:68163551-68163820	l_1003_chr14:68163550-68164952_brain

No data

Variant related genes	Relation type
ENSG00000201529	Chromatin interaction
ENSG00000100568	Chromatin interaction
ENSG00000081181	Chromatin interaction
ENSG00000258466	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10129402	1.00[AMR][1000 genomes]
rs10148493	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148929	1.00[AMR][1000 genomes]
rs10150303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11625247	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12435419	1.00[AMR][1000 genomes]
rs12882546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12894770	1.00[AMR][1000 genomes]
rs1474796	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1535088	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955467	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092691	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2320028	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899223	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902505	0.92[AFR][1000 genomes]
rs4902513	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6573798	1.00[AMR][1000 genomes]
rs7143260	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147365	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157923	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159735	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006137	1.00[AMR][1000 genomes]
rs8011138	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017085	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68162600-68163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68162600-68163800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:68162600-68164400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:68162600-68166200	Enhancers	Liver	Liver
5	chr14:68162600-68167000	Weak transcription	Osteobl	bone
6	chr14:68162600-68171400	Weak transcription	Aorta	Aorta
7	chr14:68162600-68171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:68162800-68164000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:68162800-68171000	Weak transcription	A549	lung
10	chr14:68162800-68171200	Weak transcription	K562	blood
11	chr14:68163200-68164000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68163200-68166200	Enhancers	HepG2	liver
13	chr14:68163200-68167000	Weak transcription	Hela-S3	cervix
14	chr14:68163400-68163800	Weak transcription	Monocytes-CD14+_RO01746	blood

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