Variant report

Variant	rs10150303
Chromosome Location	chr14:68152810-68152811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68150930..68153395-chr14:68158347..68160365,2	MCF-7	breast:
2	chr14:68152032..68159100-chr14:68160764..68163993,10	K562	blood:
3	chr14:68143928..68146779-chr14:68151837..68154515,2	K562	blood:
4	chr14:68143928..68146779-chr14:68151837..68154556,3	K562	blood:
5	chr14:68151498..68153240-chr14:68153514..68155847,2	MCF-7	breast:
6	chr14:68139314..68147611-chr14:68148827..68154391,14	MCF-7	breast:
7	chr14:68138429..68143685-chr14:68149578..68154548,6	K562	blood:
8	chr14:68149599..68152832-chr14:68159516..68162533,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction
ENSG00000072042	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129402	1.00[AMR][1000 genomes]
rs10148493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148929	1.00[AMR][1000 genomes]
rs11625247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12435419	1.00[AMR][1000 genomes]
rs12882546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12894770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474796	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1535088	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2092691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2320028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902505	0.96[AFR][1000 genomes]
rs4902513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902515	0.81[AFR][1000 genomes]
rs6573798	1.00[AMR][1000 genomes]
rs7143260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159735	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006137	1.00[AMR][1000 genomes]
rs8011138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017290	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68142000-68157000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:68142200-68155200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:68142200-68155400	Weak transcription	Colonic Mucosa	Colon
4	chr14:68142400-68155000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:68142400-68155400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:68142400-68160600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:68142400-68160800	Weak transcription	Right Atrium	heart
8	chr14:68142600-68153000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:68143000-68159600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:68143000-68160200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:68143200-68160600	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:68143400-68159600	Strong transcription	Dnd41	blood
13	chr14:68143400-68160800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:68143600-68159600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:68143800-68159400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:68143800-68159800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr14:68143800-68160000	Strong transcription	Fetal Thymus	thymus
18	chr14:68143800-68160200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:68144200-68158400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:68144200-68159400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:68144200-68159600	Strong transcription	HepG2	liver
22	chr14:68144200-68159800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr14:68144200-68160000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr14:68144200-68160000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:68144200-68160000	Strong transcription	Primary T cells from cord blood	blood
26	chr14:68144200-68160200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:68144200-68160400	Strong transcription	Fetal Muscle Leg	muscle
28	chr14:68144200-68160800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:68144600-68160600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:68144800-68159800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:68144800-68159800	Strong transcription	Liver	Liver
32	chr14:68145400-68153200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:68147600-68159600	Strong transcription	NH-A	brain
34	chr14:68147600-68160200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:68148000-68156600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:68148000-68159800	Strong transcription	A549	lung
37	chr14:68148000-68160000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr14:68148200-68155000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:68148200-68156800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:68148200-68156800	Weak transcription	Stomach Mucosa	stomach
41	chr14:68148200-68159800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:68148200-68159800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:68148400-68159600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr14:68148400-68160000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:68148600-68159200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr14:68148600-68159400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr14:68148600-68159800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr14:68148600-68159800	Strong transcription	HSMM	muscle
49	chr14:68148800-68156800	Strong transcription	NHEK	skin
50	chr14:68149000-68153200	Strong transcription	Brain Germinal Matrix	brain

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