Variant report

Variant	rs10132626
Chromosome Location	chr14:69870418-69870419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69823607..69825370-chr14:69868914..69871181,2	MCF-7	breast:
2	chr14:69825390..69827894-chr14:69869921..69871865,2	MCF-7	breast:
3	chr14:69618593..69621450-chr14:69868461..69871153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10130642	0.82[AFR][1000 genomes]
rs10131446	0.82[AMR][1000 genomes]
rs10137668	0.87[YRI][hapmap]
rs10142738	0.83[AFR][1000 genomes]
rs10148090	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11620664	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11622130	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11624753	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11624756	0.81[ASN][1000 genomes]
rs11626070	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11844803	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11847666	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12185028	0.84[ASN][1000 genomes]
rs12385913	0.85[CHD][hapmap];0.93[LWK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17106979	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17764155	1.00[ASW][hapmap];0.88[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17836240	0.85[ASW][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1952255	0.84[AFR][1000 genomes]
rs2015547	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2061088	0.85[CHD][hapmap];0.85[LWK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2168241	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28451089	0.83[AMR][1000 genomes]
rs28531897	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28616724	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs57148905	0.81[AFR][1000 genomes]
rs6573886	0.81[AMR][1000 genomes]
rs7143230	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7152301	0.85[CHD][hapmap];0.93[LWK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs7155178	0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7161463	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72722198	0.81[AFR][1000 genomes]
rs72723815	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72723830	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72723840	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs8016334	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016618	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9630395	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526398	chr14:69870418-69870944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10132626	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69866200-69888000	Weak transcription	Aorta	Aorta
2	chr14:69866800-69875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:69867200-69871200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69867800-69870600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:69868000-69870600	Weak transcription	Fetal Intestine Small	intestine
6	chr14:69868000-69870600	Weak transcription	Left Ventricle	heart
7	chr14:69868000-69870800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:69868000-69872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69868000-69872600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:69868000-69872800	Weak transcription	Placenta	Placenta
11	chr14:69868000-69875000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:69868000-69875400	Weak transcription	Spleen	Spleen
13	chr14:69868000-69876200	Weak transcription	Small Intestine	intestine
14	chr14:69868000-69877000	Weak transcription	HSMMtube	muscle
15	chr14:69868000-69877800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69868000-69890600	Weak transcription	Colonic Mucosa	Colon
17	chr14:69868000-69890800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:69868000-69890800	Weak transcription	Fetal Lung	lung
19	chr14:69868000-69891000	Weak transcription	Brain Anterior Caudate	brain
20	chr14:69868000-69892200	Weak transcription	Lung	lung
21	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
22	chr14:69868200-69870600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:69868200-69870600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:69868200-69870600	Weak transcription	Brain Substantia Nigra	brain
25	chr14:69868200-69870600	Weak transcription	Psoas Muscle	Psoas
26	chr14:69868200-69871000	Enhancers	Fetal Brain Male	brain
27	chr14:69868200-69872600	Weak transcription	Fetal Stomach	stomach
28	chr14:69868200-69873600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:69868200-69874800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:69868200-69874800	Weak transcription	Pancreas	Pancrea
31	chr14:69868200-69875400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr14:69868200-69881200	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:69868200-69888400	Weak transcription	Fetal Intestine Large	intestine
34	chr14:69868200-69890000	Weak transcription	A549	lung
35	chr14:69868200-69890200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:69868200-69890400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr14:69868200-69890600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:69868200-69890600	Weak transcription	HSMM	muscle
39	chr14:69868200-69890800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:69868200-69890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:69868200-69891400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:69868400-69870600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:69868400-69871400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:69868400-69872400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:69868400-69888400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:69868600-69870600	Weak transcription	Primary B cells from cord blood	blood
47	chr14:69868600-69875800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:69868600-69877200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:69868800-69870600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69868800-69874800	Weak transcription	Colon Smooth Muscle	Colon

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