Variant report

Variant	rs17764155
Chromosome Location	chr14:69853073-69853074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69618300..69620469-chr14:69851815..69853623,2	MCF-7	breast:
2	chr14:69841947..69843933-chr14:69852342..69854266,2	MCF-7	breast:
3	chr14:69851342..69853414-chr14:69856070..69857850,2	MCF-7	breast:
4	chr14:69852137..69854406-chr14:69863608..69866088,3	MCF-7	breast:
5	chr14:69824029..69825880-chr14:69851725..69853417,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10130642	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10131446	0.82[AMR][1000 genomes]
rs10132626	1.00[ASW][hapmap];0.88[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10137655	0.82[YRI][hapmap]
rs10137668	0.91[YRI][hapmap]
rs10142738	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10148090	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11620664	0.91[ASN][1000 genomes]
rs11622130	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11624753	0.91[ASN][1000 genomes]
rs11624756	0.89[ASN][1000 genomes]
rs11626070	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11844803	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11847666	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185028	0.91[ASN][1000 genomes]
rs12385913	1.00[CHD][hapmap];0.95[LWK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17106979	0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17836240	0.85[ASW][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1952255	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2015547	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2061088	1.00[CHD][hapmap];0.88[LWK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2168241	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28451089	0.83[AMR][1000 genomes]
rs28531897	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28616724	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57148905	0.83[AFR][1000 genomes]
rs57675317	0.82[AFR][1000 genomes]
rs57941356	0.82[AFR][1000 genomes]
rs6573886	0.81[AMR][1000 genomes]
rs7143230	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7152301	1.00[CHD][hapmap];0.95[LWK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7155178	0.95[YRI][hapmap];0.91[ASN][1000 genomes]
rs7161463	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722198	0.83[AFR][1000 genomes]
rs72722199	0.81[AFR][1000 genomes]
rs72723815	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72723830	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72723840	0.91[ASN][1000 genomes]
rs72723850	0.86[ASN][1000 genomes]
rs8016334	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016618	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9630395	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17764155	C14orf181	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:69841000-69863400	Strong transcription	A549	lung
4	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
11	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
12	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:69842400-69854400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:69842800-69854800	Strong transcription	Primary T cells from cord blood	blood
16	chr14:69842800-69857800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
18	chr14:69843000-69854000	Strong transcription	Hela-S3	cervix
19	chr14:69843400-69856600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:69843400-69863000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:69843600-69862600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:69843600-69863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:69843800-69856400	Strong transcription	Dnd41	blood
24	chr14:69843800-69859800	Weak transcription	Right Ventricle	heart
25	chr14:69843800-69860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69843800-69863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:69843800-69863400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:69843800-69863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:69843800-69863400	Strong transcription	HSMM	muscle
30	chr14:69843800-69863800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:69845800-69857600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:69845800-69858600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:69845800-69859200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr14:69845800-69863000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:69845800-69863400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:69846000-69857600	Strong transcription	Liver	Liver
37	chr14:69846000-69862200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:69846000-69863000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:69846000-69863000	Strong transcription	HUVEC	blood vessel
40	chr14:69846000-69863000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr14:69846200-69854200	Strong transcription	NH-A	brain
42	chr14:69846200-69857000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr14:69846200-69860200	Strong transcription	Primary B cells from cord blood	blood
44	chr14:69846600-69856600	Weak transcription	Esophagus	oesophagus
45	chr14:69848600-69863400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:69848800-69856200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:69848800-69856400	Strong transcription	GM12878-XiMat	blood
48	chr14:69849400-69854400	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr14:69849400-69863000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr14:69849400-69863000	Strong transcription	Placenta	Placenta

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