Variant report

Variant	rs57941356
Chromosome Location	chr14:69822183-69822184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69821172..69826934-chr14:69835934..69842143,9	MCF-7	breast:
2	chr14:69810681..69813205-chr14:69822055..69824419,2	K562	blood:
3	chr14:69822116..69824651-chr14:69862569..69864900,2	MCF-7	breast:
4	chr14:69820575..69822363-chr14:69824777..69827563,2	MCF-7	breast:
5	chr14:69821722..69824231-chr14:69923203..69925103,2	MCF-7	breast:
6	chr14:69800242..69802795-chr14:69820027..69823716,5	MCF-7	breast:
7	chr14:69821220..69824181-chr14:69864124..69866738,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10130642	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10131686	0.81[AMR][1000 genomes]
rs10137655	0.81[AMR][1000 genomes]
rs10137668	0.81[AMR][1000 genomes]
rs10142738	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10148090	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10150434	0.81[AMR][1000 genomes]
rs11620664	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622130	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11624753	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624756	0.85[EUR][1000 genomes]
rs11626070	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11844803	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11847666	0.82[AFR][1000 genomes]
rs12147167	0.81[AMR][1000 genomes]
rs12147983	0.81[AMR][1000 genomes]
rs12147999	0.81[AMR][1000 genomes]
rs12185028	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12385913	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17106979	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17764155	0.82[AFR][1000 genomes]
rs1952255	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2015547	0.83[AFR][1000 genomes]
rs2061088	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2168241	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28616724	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35286134	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36088452	0.85[AFR][1000 genomes]
rs45536240	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55751520	0.81[AMR][1000 genomes]
rs57148905	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57675317	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59116152	0.81[AMR][1000 genomes]
rs59181716	0.81[AMR][1000 genomes]
rs60238702	0.81[AMR][1000 genomes]
rs61436917	0.81[AMR][1000 genomes]
rs61564515	0.81[AMR][1000 genomes]
rs7143230	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7152301	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7155178	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722198	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72722199	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72723815	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72723830	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72723840	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72723847	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72723850	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72723857	0.81[AMR][1000 genomes]
rs8016618	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9630395	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69793400-69822600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:69809800-69822800	Weak transcription	Right Atrium	heart
3	chr14:69815600-69838800	Weak transcription	Brain Germinal Matrix	brain
4	chr14:69816400-69822200	Weak transcription	Right Ventricle	heart
5	chr14:69817600-69822600	Weak transcription	Fetal Stomach	stomach
6	chr14:69817600-69823000	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:69818400-69822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:69818400-69827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:69819000-69822400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:69819200-69822400	Weak transcription	Left Ventricle	heart
12	chr14:69820400-69823000	Enhancers	Primary B cells from cord blood	blood
13	chr14:69820600-69822800	Enhancers	Fetal Thymus	thymus
14	chr14:69820600-69823000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69820800-69822200	Enhancers	Esophagus	oesophagus
16	chr14:69820800-69823200	Enhancers	Fetal Muscle Leg	muscle
17	chr14:69820800-69823200	Weak transcription	Gastric	stomach
18	chr14:69821000-69822200	Weak transcription	HSMMtube	muscle
19	chr14:69821000-69822400	Flanking Active TSS	GM12878-XiMat	blood
20	chr14:69821000-69823200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:69821000-69838800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:69821000-69839600	Weak transcription	Fetal Brain Female	brain
23	chr14:69821200-69822600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:69821200-69822600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:69821200-69822800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr14:69821200-69823000	Enhancers	Fetal Muscle Trunk	muscle
27	chr14:69821200-69823000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:69821200-69823200	Enhancers	NHDF-Ad	bronchial
29	chr14:69821200-69825400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:69821400-69822200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:69821400-69823000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:69821400-69823200	Enhancers	Rectal Smooth Muscle	rectum
33	chr14:69821400-69824200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:69821600-69822200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr14:69821600-69822400	Enhancers	Brain Anterior Caudate	brain
36	chr14:69821600-69822800	Enhancers	Aorta	Aorta
37	chr14:69821600-69823000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:69821600-69823200	Enhancers	Colon Smooth Muscle	Colon
39	chr14:69821600-69823600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69821800-69822200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:69821800-69822200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr14:69821800-69822200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:69821800-69822400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:69821800-69823000	Enhancers	Brain Hippocampus Middle	brain
45	chr14:69821800-69823200	Enhancers	Stomach Smooth Muscle	stomach
46	chr14:69821800-69824200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:69821800-69827200	Weak transcription	Fetal Intestine Small	intestine
48	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
49	chr14:69822000-69822400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:69822000-69822400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links