Variant report

Variant	rs2061088
Chromosome Location	chr14:69842277-69842278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69841947..69843933-chr14:69852342..69854266,2	MCF-7	breast:
2	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
3	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
4	chr14:69833439..69838748-chr14:69841652..69843857,5	K562	blood:
5	chr14:69841672..69843783-chr14:69865247..69866834,2	MCF-7	breast:
6	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1010661	0.80[CEU][hapmap]
rs10130642	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10131686	0.93[AMR][1000 genomes]
rs10132626	0.85[CHD][hapmap];0.85[LWK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10137655	0.81[ASW][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes]
rs10137668	0.90[ASW][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes]
rs10142738	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10148090	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150434	0.93[AMR][1000 genomes]
rs11158808	0.82[TSI][hapmap]
rs11620664	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624753	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624756	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847666	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12147167	0.93[AMR][1000 genomes]
rs12147983	0.93[AMR][1000 genomes]
rs12147999	0.93[AMR][1000 genomes]
rs12185028	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764155	1.00[CHD][hapmap];0.88[LWK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1952255	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2015547	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2168241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28531897	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28616724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286134	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36088452	0.81[AFR][1000 genomes]
rs45536240	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55751520	0.93[AMR][1000 genomes]
rs57148905	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57675317	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57941356	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59116152	0.93[AMR][1000 genomes]
rs59181716	0.93[AMR][1000 genomes]
rs60238702	0.93[AMR][1000 genomes]
rs61436917	0.93[AMR][1000 genomes]
rs61564515	0.93[AMR][1000 genomes]
rs7143230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152301	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7155178	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161463	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72722198	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72722199	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72723815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723830	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723840	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723847	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72723850	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72723857	0.93[AMR][1000 genomes]
rs74061833	0.89[AMR][1000 genomes]
rs8016334	0.91[ASN][1000 genomes]
rs8016618	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630395	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2061088	GALNTL1	cis	cerebellum	SCAN
rs2061088	C14orf181	cis	parietal	SCAN
rs2061088	ADAM21	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
3	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
5	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69830200-69842400	Weak transcription	NHDF-Ad	bronchial
7	chr14:69830200-69843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:69831200-69842800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
10	chr14:69831400-69843200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:69831600-69843000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:69832000-69842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:69832400-69842400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
15	chr14:69834200-69842800	Weak transcription	Lung	lung
16	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
17	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
18	chr14:69835800-69843400	Weak transcription	Brain Angular Gyrus	brain
19	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
20	chr14:69836800-69843200	Weak transcription	Right Ventricle	heart
21	chr14:69836800-69851600	Weak transcription	Gastric	stomach
22	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:69837200-69842400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:69837200-69842600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:69837200-69842800	Weak transcription	Fetal Thymus	thymus
26	chr14:69837200-69843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr14:69837400-69842400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:69837400-69842800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:69837400-69842800	Weak transcription	Ovary	ovary
31	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:69837600-69843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:69838000-69842400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
35	chr14:69839000-69843000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
37	chr14:69839600-69842400	Weak transcription	HepG2	liver
38	chr14:69839800-69842600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:69839800-69842800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:69840000-69842400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:69840000-69842600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:69840000-69845000	Weak transcription	K562	blood
44	chr14:69840200-69842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:69840200-69842800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:69840200-69843200	Weak transcription	NHLF	lung
47	chr14:69840600-69842800	Weak transcription	Colon Smooth Muscle	Colon
48	chr14:69840600-69843200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:69840800-69842400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon

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