Variant report

Variant	rs2015547
Chromosome Location	chr14:69861181-69861182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69861047-69861341	HepG2	liver:	n/a	n/a
2	CEBPB	chr14:69861171-69861390	HepG2	liver:	n/a	n/a
3	CEBPB	chr14:69861139-69861354	K562	blood:	n/a	n/a
4	CEBPB	chr14:69861172-69861437	ECC-1	luminal epithelium:	n/a	n/a
5	CEBPB	chr14:69861137-69861337	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr14:69861024-69861452	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
SLC39A9	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10130642	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10131446	0.81[AMR][1000 genomes]
rs10132626	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10142738	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10148090	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11620664	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11622130	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11624753	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11624756	0.86[ASN][1000 genomes]
rs11626070	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11844803	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11847666	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12185028	0.89[ASN][1000 genomes]
rs12385913	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17106979	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17764155	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17836240	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1952255	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2061088	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2168241	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28451089	0.82[AMR][1000 genomes]
rs28531897	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28616724	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57148905	0.84[AFR][1000 genomes]
rs57675317	0.83[AFR][1000 genomes]
rs57941356	0.83[AFR][1000 genomes]
rs7143230	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7152301	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7155178	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7161463	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72722198	0.84[AFR][1000 genomes]
rs72722199	0.82[AFR][1000 genomes]
rs72723815	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72723830	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72723840	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72723850	0.83[ASN][1000 genomes]
rs8016334	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016618	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9630395	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2015547	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69841000-69863400	Strong transcription	A549	lung
3	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
8	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
10	chr14:69843400-69863000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:69843600-69862600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:69843600-69863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:69843800-69863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:69843800-69863400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69843800-69863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:69843800-69863400	Strong transcription	HSMM	muscle
17	chr14:69843800-69863800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:69845800-69863000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:69845800-69863400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:69846000-69862200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:69846000-69863000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr14:69846000-69863000	Strong transcription	HUVEC	blood vessel
23	chr14:69846000-69863000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr14:69848600-69863400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:69849400-69863000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr14:69849400-69863000	Strong transcription	Placenta	Placenta
27	chr14:69849600-69863000	Strong transcription	HMEC	breast
28	chr14:69850200-69863000	Strong transcription	Osteobl	bone
29	chr14:69850400-69863600	Strong transcription	Fetal Muscle Leg	muscle
30	chr14:69850800-69862000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr14:69851000-69863000	Strong transcription	Fetal Intestine Large	intestine
32	chr14:69851000-69863200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69851400-69862600	Strong transcription	NHEK	skin
34	chr14:69851400-69862800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr14:69851600-69862600	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr14:69852000-69861800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:69852400-69862200	Strong transcription	Fetal Stomach	stomach
38	chr14:69853000-69863800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:69854200-69864000	Weak transcription	Aorta	Aorta
40	chr14:69855200-69862400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr14:69855200-69863000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr14:69855400-69862400	Strong transcription	K562	blood
43	chr14:69855400-69862600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:69855800-69862000	Strong transcription	Thymus	Thymus
45	chr14:69855800-69863200	Strong transcription	NH-A	brain
46	chr14:69856000-69863000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:69856000-69863000	Strong transcription	Fetal Lung	lung
48	chr14:69856200-69862800	Strong transcription	NHLF	lung
49	chr14:69856400-69862400	Strong transcription	NHDF-Ad	bronchial
50	chr14:69856400-69862800	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links