Variant report

Variant	rs10134507
Chromosome Location	chr14:56295062-56295063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11620875	0.83[EUR][1000 genomes]
rs11621835	0.80[EUR][1000 genomes]
rs11622627	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11622641	0.89[EUR][1000 genomes]
rs11622710	0.88[EUR][1000 genomes]
rs11624167	0.95[EUR][1000 genomes]
rs11624516	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11625571	0.91[EUR][1000 genomes]
rs11625869	0.82[EUR][1000 genomes]
rs11626057	0.80[EUR][1000 genomes]
rs11627629	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs11628040	0.89[EUR][1000 genomes]
rs12890121	0.81[EUR][1000 genomes]
rs17253841	0.89[EUR][1000 genomes]
rs17832467	0.95[EUR][1000 genomes]
rs1999705	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1999706	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2105058	0.83[EUR][1000 genomes]
rs2152287	0.83[EUR][1000 genomes]
rs2342594	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2342595	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34096981	0.83[EUR][1000 genomes]
rs34421003	0.93[EUR][1000 genomes]
rs34540577	0.82[EUR][1000 genomes]
rs35290945	0.80[EUR][1000 genomes]
rs35527253	0.81[EUR][1000 genomes]
rs35559254	0.91[EUR][1000 genomes]
rs36096896	0.82[EUR][1000 genomes]
rs36149160	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36188950	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4601950	0.81[EUR][1000 genomes]
rs55788205	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55837858	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57658601	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61975563	0.80[EUR][1000 genomes]
rs61975579	0.81[EUR][1000 genomes]
rs61977780	0.89[EUR][1000 genomes]
rs61977781	0.89[EUR][1000 genomes]
rs61977782	0.89[EUR][1000 genomes]
rs61977785	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs999817	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56290800-56295400	Weak transcription	Pancreas	Pancrea
2	chr14:56294000-56295200	Enhancers	Gastric	stomach
3	chr14:56294000-56301800	Enhancers	Stomach Mucosa	stomach
4	chr14:56295000-56295600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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