Variant report

Variant	rs34540577
Chromosome Location	chr14:56307623-56307624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10134507	0.82[EUR][1000 genomes]
rs11620875	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621835	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11622627	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622641	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11622710	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11624167	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11624516	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11625571	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11625869	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626057	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11627629	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11628040	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12883012	0.80[EUR][1000 genomes]
rs12890121	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12894971	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253841	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17832467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1999705	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1999706	0.85[EUR][1000 genomes]
rs2105058	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152287	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342594	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342595	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28490128	0.88[ASN][1000 genomes]
rs34096981	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34186256	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34421003	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34535564	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34663121	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35094937	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35290945	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35527253	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35559254	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35813917	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36096896	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36112734	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36120082	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36149160	0.84[EUR][1000 genomes]
rs36188950	0.85[EUR][1000 genomes]
rs4340246	0.82[AMR][1000 genomes]
rs4340247	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4465519	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4601950	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55788205	0.82[EUR][1000 genomes]
rs55837858	0.82[EUR][1000 genomes]
rs57658601	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61975563	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61975579	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977780	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61977781	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61977782	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61977785	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71412700	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs999817	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56305400-56311600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:56306200-56314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:56307600-56307800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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