Variant report

Variant	rs10139831
Chromosome Location	chr14:32916613-32916614
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10130628	0.93[ASN][1000 genomes]
rs11628508	0.95[ASN][1000 genomes]
rs1951189	0.81[ASN][1000 genomes]
rs1957021	0.90[ASN][1000 genomes]
rs2145594	0.85[ASN][1000 genomes]
rs3784191	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784193	0.93[ASN][1000 genomes]
rs6571522	0.87[ASN][1000 genomes]
rs6571523	0.87[ASN][1000 genomes]
rs6571524	0.87[ASN][1000 genomes]
rs6571525	0.86[ASN][1000 genomes]
rs7143943	0.88[ASN][1000 genomes]
rs7157869	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
4	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:32909000-32919000	Weak transcription	Ovary	ovary
6	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:32911800-32918800	Weak transcription	Aorta	Aorta
8	chr14:32914400-32919200	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32914600-32917200	Weak transcription	Brain Angular Gyrus	brain
11	chr14:32916200-32916800	Enhancers	Brain Anterior Caudate	brain
12	chr14:32916200-32917000	Enhancers	Fetal Heart	heart
13	chr14:32916200-32917600	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:32916200-32917600	Enhancers	Fetal Lung	lung
15	chr14:32916400-32916800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:32916400-32920200	Enhancers	Colon Smooth Muscle	Colon
17	chr14:32916400-32921000	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links