Variant report

Variant	rs3784193
Chromosome Location	chr14:32923441-32923442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32901776..32904730-chr14:32922169..32924745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10130628	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10139831	0.93[ASN][1000 genomes]
rs11628508	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1951191	0.81[ASN][1000 genomes]
rs1957021	0.93[ASN][1000 genomes]
rs2145594	0.81[ASN][1000 genomes]
rs3784188	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3784191	1.00[ASN][1000 genomes]
rs3784194	0.89[AFR][1000 genomes]
rs3825751	0.89[AFR][1000 genomes]
rs4981969	0.84[AMR][1000 genomes]
rs6571518	0.81[ASN][1000 genomes]
rs6571522	0.82[ASN][1000 genomes]
rs6571523	0.82[ASN][1000 genomes]
rs6571524	0.82[ASN][1000 genomes]
rs6571525	0.81[ASN][1000 genomes]
rs7143943	0.83[ASN][1000 genomes]
rs7147629	0.81[ASN][1000 genomes]
rs7149947	0.81[ASN][1000 genomes]
rs7157869	0.89[ASN][1000 genomes]
rs8013463	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32919200-32926400	Weak transcription	NHDF-Ad	bronchial
2	chr14:32919600-32926800	Weak transcription	Aorta	Aorta
3	chr14:32919800-32926200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:32920800-32926200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:32920800-32926600	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:32920800-32930200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:32921600-32926400	Weak transcription	Brain Substantia Nigra	brain
8	chr14:32921800-32923800	Enhancers	Fetal Lung	lung
9	chr14:32922200-32923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:32922200-32923800	Enhancers	Colon Smooth Muscle	Colon
11	chr14:32922400-32923800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:32923000-32923800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:32923000-32923800	Enhancers	HepG2	liver
14	chr14:32923200-32923600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr14:32923200-32923600	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:32923200-32923800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:32923200-32923800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:32923200-32923800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:32923200-32923800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:32923200-32923800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr14:32923200-32923800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr14:32923200-32923800	Enhancers	Right Atrium	heart
23	chr14:32923200-32923800	Enhancers	HMEC	breast
24	chr14:32923200-32923800	Enhancers	NHEK	skin
25	chr14:32923200-32923800	Enhancers	Osteobl	bone
26	chr14:32923400-32923600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:32923400-32923600	Enhancers	Fetal Heart	heart
28	chr14:32923400-32923800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:32923400-32923800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:32923400-32923800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:32923400-32923800	Enhancers	Stomach Smooth Muscle	stomach
32	chr14:32923400-32923800	Enhancers	HSMM	muscle

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