Variant report

Variant	rs7157869
Chromosome Location	chr14:32907188-32907189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32902258..32904086-chr14:32906783..32908979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10130628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10138310	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs10139831	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141958	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs11628508	0.96[ASN][1000 genomes]
rs17409829	0.95[JPT][hapmap]
rs1951189	0.82[JPT][hapmap]
rs1957015	0.91[JPT][hapmap]
rs1957018	0.81[JPT][hapmap]
rs1957021	0.85[ASN][1000 genomes]
rs2145594	0.81[ASN][1000 genomes]
rs2224430	0.87[JPT][hapmap]
rs3784190	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs3784191	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784192	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs3784193	0.89[ASN][1000 genomes]
rs3784194	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6571515	0.81[AMR][1000 genomes]
rs6571516	0.82[AFR][1000 genomes]
rs6571518	0.81[JPT][hapmap]
rs6571522	0.83[ASN][1000 genomes]
rs6571523	0.83[ASN][1000 genomes]
rs6571524	0.83[ASN][1000 genomes]
rs6571525	0.83[ASN][1000 genomes]
rs7140949	0.85[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes]
rs7143943	0.84[ASN][1000 genomes]
rs7149947	0.90[CHB][hapmap]
rs7153204	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8013186	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes]
rs941744	0.83[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs941746	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
2	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
3	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
4	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
5	chr14:32899800-32907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:32901800-32907800	Active TSS	Aorta	Aorta
7	chr14:32902800-32907200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32902800-32907400	Weak transcription	Fetal Heart	heart
9	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
10	chr14:32903400-32908200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:32903600-32908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:32903800-32907200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:32904400-32907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:32904400-32908000	Weak transcription	Ovary	ovary
15	chr14:32904400-32908600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
17	chr14:32905400-32908400	Enhancers	Brain Substantia Nigra	brain
18	chr14:32905600-32907400	Enhancers	Colon Smooth Muscle	Colon
19	chr14:32905600-32908000	Enhancers	Brain Anterior Caudate	brain
20	chr14:32905600-32908600	Enhancers	Brain Angular Gyrus	brain
21	chr14:32905800-32908200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:32905800-32908600	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:32906000-32908600	Enhancers	Brain Hippocampus Middle	brain
24	chr14:32906200-32908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:32906400-32907200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:32906400-32908600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:32906400-32909000	Enhancers	Left Ventricle	heart
28	chr14:32906600-32908400	Weak transcription	Right Ventricle	heart
29	chr14:32906600-32908600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr14:32906800-32907200	Enhancers	GM12878-XiMat	blood
31	chr14:32907000-32907200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr14:32907000-32907600	Enhancers	Small Intestine	intestine

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