Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32902258..32904086-chr14:32906783..32908979,2	MCF-7	breast:
2	chr14:32908071..32910208-chr14:32913357..32914973,2	K562	blood:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130628	0.91[JPT][hapmap]
rs10136333	0.82[CEU][hapmap]
rs1951189	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1957015	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1957018	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1957020	0.80[JPT][hapmap]
rs2224430	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2383302	0.88[CEU][hapmap]
rs3784190	0.82[JPT][hapmap]
rs6571518	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7146377	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs7147629	1.00[YRI][hapmap]
rs7157869	0.95[JPT][hapmap]
rs9285570	0.90[CHB][hapmap]
rs941744	0.81[JPT][hapmap]
rs941746	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
3	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:32906400-32909000	Enhancers	Left Ventricle	heart
5	chr14:32907400-32909000	Enhancers	Fetal Heart	heart
6	chr14:32907800-32910000	Weak transcription	Aorta	Aorta
7	chr14:32908000-32909000	Enhancers	Ovary	ovary
8	chr14:32908200-32909000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:32908400-32909000	Strong transcription	Fetal Brain Female	brain
10	chr14:32908400-32909000	Enhancers	Stomach Smooth Muscle	stomach
11	chr14:32908600-32911400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:32908600-32912600	Weak transcription	Brain Angular Gyrus	brain
13	chr14:32908600-32912600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:32908600-32912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:32908800-32911400	Weak transcription	Brain Substantia Nigra	brain
19	chr14:32908800-32912800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:32908800-32913000	Weak transcription	Brain Anterior Caudate	brain
21	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart

Quick Search: