Variant report

Variant	rs1951189
Chromosome Location	chr14:32916986-32916987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10138310	0.82[JPT][hapmap]
rs10139831	0.81[ASN][1000 genomes]
rs10141958	0.82[JPT][hapmap]
rs11156745	0.85[ASN][1000 genomes]
rs11156746	0.83[ASN][1000 genomes]
rs11628453	0.85[ASN][1000 genomes]
rs17409829	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1815234	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1951191	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957013	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1957015	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957016	0.91[ASN][1000 genomes]
rs1957018	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1957019	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1957020	0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2224430	0.96[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2224431	0.85[ASN][1000 genomes]
rs2383302	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3784191	0.86[JPT][hapmap]
rs3784192	0.82[JPT][hapmap]
rs3784194	0.82[JPT][hapmap]
rs4329831	0.88[ASN][1000 genomes]
rs6571518	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7140949	0.82[JPT][hapmap]
rs71419908	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146377	0.91[CHB][hapmap]
rs7147629	0.94[ASN][1000 genomes]
rs7149947	0.90[YRI][hapmap]
rs7157869	0.82[JPT][hapmap]
rs7493664	0.83[ASN][1000 genomes]
rs8013186	0.91[JPT][hapmap]
rs8013463	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9285570	0.91[CHB][hapmap]
rs941746	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs941747	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs941748	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9972192	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
4	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:32909000-32919000	Weak transcription	Ovary	ovary
6	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:32911800-32918800	Weak transcription	Aorta	Aorta
8	chr14:32914400-32919200	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32914600-32917200	Weak transcription	Brain Angular Gyrus	brain
11	chr14:32916200-32917000	Enhancers	Fetal Heart	heart
12	chr14:32916200-32917600	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:32916200-32917600	Enhancers	Fetal Lung	lung
14	chr14:32916400-32920200	Enhancers	Colon Smooth Muscle	Colon
15	chr14:32916400-32921000	Enhancers	Brain Substantia Nigra	brain
16	chr14:32916800-32917200	Weak transcription	Brain Anterior Caudate	brain
17	chr14:32916800-32919400	Enhancers	Brain Inferior Temporal Lobe	brain

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