Variant report

Variant	rs4329831
Chromosome Location	chr14:32926901-32926902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11156745	0.84[ASN][1000 genomes]
rs11156746	0.82[ASN][1000 genomes]
rs11628453	0.84[ASN][1000 genomes]
rs1951189	0.88[ASN][1000 genomes]
rs1951191	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957013	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957015	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1957016	0.90[ASN][1000 genomes]
rs1957018	0.90[ASN][1000 genomes]
rs1957019	0.90[ASN][1000 genomes]
rs2224430	0.88[ASN][1000 genomes]
rs2224431	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2383302	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56837786	0.92[ASN][1000 genomes]
rs6571518	0.92[ASN][1000 genomes]
rs71419908	0.80[AMR][1000 genomes]
rs7146377	0.90[ASN][1000 genomes]
rs7147629	0.92[ASN][1000 genomes]
rs7493664	0.85[ASN][1000 genomes]
rs8013463	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285570	0.89[ASN][1000 genomes]
rs941746	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9972146	0.92[ASN][1000 genomes]
rs9972147	0.90[ASN][1000 genomes]
rs9972192	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32920800-32930200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:32923800-32927200	Weak transcription	HSMM	muscle
3	chr14:32923800-32927400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:32923800-32927800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:32923800-32929600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:32923800-32929600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:32923800-32936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32924400-32928200	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:32925000-32928200	Enhancers	Fetal Heart	heart
10	chr14:32926200-32927000	Enhancers	Brain Anterior Caudate	brain
11	chr14:32926200-32928200	Enhancers	Fetal Lung	lung
12	chr14:32926200-32928600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:32926400-32927000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:32926400-32927000	Enhancers	NHLF	lung
15	chr14:32926400-32927200	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:32926400-32927400	Enhancers	NHDF-Ad	bronchial
17	chr14:32926400-32927600	Enhancers	Brain Substantia Nigra	brain
18	chr14:32926400-32928200	Enhancers	Osteobl	bone
19	chr14:32926400-32928600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:32926400-32928600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:32926600-32927000	Enhancers	Brain Hippocampus Middle	brain
22	chr14:32926600-32927200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:32926600-32927800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:32926800-32927000	ZNF genes & repeats	Aorta	Aorta
25	chr14:32926800-32928000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr14:32926800-32936800	Weak transcription	Brain Cingulate Gyrus	brain

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