Variant report

Variant	rs7146377
Chromosome Location	chr14:32935468-32935469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17409829	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1951189	0.91[CHB][hapmap]
rs1951191	0.83[ASN][1000 genomes]
rs1957013	0.80[ASN][1000 genomes]
rs1957015	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs1957016	0.80[ASN][1000 genomes]
rs1957018	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.80[ASN][1000 genomes]
rs1957019	0.80[ASN][1000 genomes]
rs1957020	0.82[CEU][hapmap]
rs1957024	0.86[AFR][1000 genomes]
rs2224430	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[EUR][1000 genomes]
rs2224431	0.88[ASN][1000 genomes]
rs4329831	0.90[ASN][1000 genomes]
rs56837786	0.99[ASN][1000 genomes]
rs6571518	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7147629	1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7149947	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs7157747	0.88[CEU][hapmap]
rs7493664	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8013463	0.83[ASN][1000 genomes]
rs9285570	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941746	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs9972146	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9972147	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9972192	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32923800-32936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32926800-32936800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:32930600-32936800	Weak transcription	Aorta	Aorta
4	chr14:32930600-32937400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:32931000-32941400	Weak transcription	Placenta Amnion	Placenta Amnion

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