Variant report

Variant	rs1957015
Chromosome Location	chr14:32909169-32909170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32908071..32910208-chr14:32913357..32914973,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10130628	0.86[JPT][hapmap]
rs10136333	0.89[CEU][hapmap]
rs11156745	0.92[ASN][1000 genomes]
rs11156746	0.90[ASN][1000 genomes]
rs11628453	0.93[ASN][1000 genomes]
rs17409829	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1951189	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1951191	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1957013	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957016	0.99[ASN][1000 genomes]
rs1957018	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1957019	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957020	0.83[CHB][hapmap]
rs2224430	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2383302	0.87[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3784191	0.82[JPT][hapmap]
rs4329831	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56837786	0.80[ASN][1000 genomes]
rs6571518	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs71419908	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7146377	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs7147629	0.96[ASN][1000 genomes]
rs7157869	0.91[JPT][hapmap]
rs8013463	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9285570	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs941746	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941747	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs941748	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9972146	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
3	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
4	chr14:32907800-32910000	Weak transcription	Aorta	Aorta
5	chr14:32908600-32911400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:32908600-32912600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:32908600-32912600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:32908600-32912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:32908800-32911400	Weak transcription	Brain Substantia Nigra	brain
13	chr14:32908800-32912800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:32908800-32913000	Weak transcription	Brain Anterior Caudate	brain
15	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
16	chr14:32909000-32910600	Weak transcription	Fetal Brain Female	brain
17	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:32909000-32919000	Weak transcription	Ovary	ovary
19	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach

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