Variant report

Variant	rs1957018
Chromosome Location	chr14:32911026-32911027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11156745	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11156746	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11628453	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11847849	0.82[YRI][hapmap]
rs11851693	0.82[YRI][hapmap]
rs17409829	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1951189	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1951191	0.97[ASN][1000 genomes]
rs1957013	0.97[ASN][1000 genomes]
rs1957015	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1957016	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957019	0.94[ASN][1000 genomes]
rs1957020	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs2224430	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2383302	0.84[MEX][hapmap]
rs3784191	0.81[CHD][hapmap];0.91[JPT][hapmap]
rs4329831	0.90[ASN][1000 genomes]
rs56837786	0.82[ASN][1000 genomes]
rs6571518	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146377	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.80[ASN][1000 genomes]
rs7147629	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157747	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7157869	0.81[JPT][hapmap]
rs8013186	0.86[JPT][hapmap]
rs8013463	0.97[ASN][1000 genomes]
rs9285570	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap]
rs941746	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs941748	0.92[AFR][1000 genomes]
rs9972146	0.82[ASN][1000 genomes]
rs9972147	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
3	chr14:32908600-32911400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:32908600-32912600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:32908600-32912600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:32908600-32912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:32908800-32911400	Weak transcription	Brain Substantia Nigra	brain
11	chr14:32908800-32912800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:32908800-32913000	Weak transcription	Brain Anterior Caudate	brain
13	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
14	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:32909000-32919000	Weak transcription	Ovary	ovary
16	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:32910000-32911800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links