Variant report

Variant	rs7157747
Chromosome Location	chr14:32898620-32898621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11156745	0.87[AMR][1000 genomes]
rs11156746	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11628453	0.93[AMR][1000 genomes]
rs1957016	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1957018	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2224430	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2383302	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3784188	0.87[JPT][hapmap]
rs6571518	0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71419908	0.95[ASN][1000 genomes]
rs7146377	0.88[CEU][hapmap]
rs7147629	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9285570	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32887800-32901800	Weak transcription	Ovary	ovary
2	chr14:32891800-32899400	Weak transcription	Osteobl	bone
3	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
5	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
6	chr14:32895800-32899200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:32896200-32899200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:32896200-32902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:32896400-32900400	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:32896600-32899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:32896600-32899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:32896600-32902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:32896600-32902000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:32896800-32903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:32897200-32899400	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr14:32897400-32899000	Enhancers	Fetal Lung	lung
17	chr14:32897400-32899600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:32897600-32899000	Active TSS	Right Ventricle	heart
19	chr14:32897600-32899600	Active TSS	Stomach Smooth Muscle	stomach
20	chr14:32897600-32899800	Active TSS	Colon Smooth Muscle	Colon
21	chr14:32897600-32901200	Enhancers	Brain Substantia Nigra	brain
22	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
23	chr14:32897800-32898800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:32898000-32899400	Weak transcription	Aorta	Aorta
25	chr14:32898000-32899400	Weak transcription	NH-A	brain
26	chr14:32898000-32900000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr14:32898000-32902000	Weak transcription	Left Ventricle	heart
28	chr14:32898000-32902600	Weak transcription	Brain Germinal Matrix	brain
29	chr14:32898000-32906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:32898200-32899200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:32898200-32899800	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr14:32898200-32901800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
34	chr14:32898400-32899200	Enhancers	Brain Anterior Caudate	brain
35	chr14:32898400-32899200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:32898400-32901200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:32898400-32901800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:32898400-32902200	Weak transcription	Esophagus	oesophagus
39	chr14:32898400-32902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:32898400-32903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
42	chr14:32898600-32899000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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