Variant report

Variant	rs11628453
Chromosome Location	chr14:32912639-32912640
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11156745	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11156746	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1951189	0.85[ASN][1000 genomes]
rs1951191	0.92[ASN][1000 genomes]
rs1957013	0.92[ASN][1000 genomes]
rs1957015	0.93[ASN][1000 genomes]
rs1957016	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957018	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957019	0.89[ASN][1000 genomes]
rs2224430	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4329831	0.84[ASN][1000 genomes]
rs6571518	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147629	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157747	0.93[AMR][1000 genomes]
rs8013463	0.92[ASN][1000 genomes]
rs941746	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
3	chr14:32908600-32912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:32908800-32912800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:32908800-32913000	Weak transcription	Brain Anterior Caudate	brain
9	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
10	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:32909000-32919000	Weak transcription	Ovary	ovary
12	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:32911800-32912800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:32911800-32912800	Weak transcription	Brain Substantia Nigra	brain
15	chr14:32911800-32918800	Weak transcription	Aorta	Aorta
16	chr14:32912400-32913400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32912600-32913000	Enhancers	Brain Hippocampus Middle	brain
18	chr14:32912600-32914600	Enhancers	Brain Angular Gyrus	brain
19	chr14:32912600-32915200	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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