Variant report

Variant	rs8013186
Chromosome Location	chr14:32920004-32920005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32912752..32915224-chr14:32918324..32920883,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130628	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10138310	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10141958	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141964	0.97[ASN][1000 genomes]
rs1951189	0.91[JPT][hapmap]
rs1957018	0.86[JPT][hapmap]
rs1957020	0.86[JPT][hapmap]
rs1957022	0.83[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs28504132	0.96[ASN][1000 genomes]
rs28594748	0.96[ASN][1000 genomes]
rs3784190	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784191	0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes]
rs3784192	0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3784194	0.89[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs3825751	1.00[ASN][1000 genomes]
rs6571515	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571516	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571518	0.86[JPT][hapmap]
rs6571519	0.97[ASN][1000 genomes]
rs6571520	0.95[ASN][1000 genomes]
rs6571521	0.91[ASN][1000 genomes]
rs7140949	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146913	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149947	0.89[CHB][hapmap]
rs7153204	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157869	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes]
rs8010075	0.93[ASN][1000 genomes]
rs941744	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3375924	chr14:32919493-32920041	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:32916400-32920200	Enhancers	Colon Smooth Muscle	Colon
6	chr14:32916400-32921000	Enhancers	Brain Substantia Nigra	brain
7	chr14:32918800-32920800	Enhancers	Fetal Heart	heart
8	chr14:32919000-32920800	Enhancers	Brain Angular Gyrus	brain
9	chr14:32919200-32920800	Enhancers	Brain Hippocampus Middle	brain
10	chr14:32919200-32926400	Weak transcription	NHDF-Ad	bronchial
11	chr14:32919400-32923200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:32919400-32923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:32919600-32920400	Enhancers	Fetal Lung	lung
14	chr14:32919600-32926800	Weak transcription	Aorta	Aorta
15	chr14:32919800-32920800	Enhancers	Brain Anterior Caudate	brain
16	chr14:32919800-32926200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:32920000-32920800	Enhancers	Cortex derived primary cultured neurospheres	brain

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