Variant report

Variant	rs3784190
Chromosome Location	chr14:32905038-32905039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32904805..32907044-chr14:32912788..32914378,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10130628	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs10138310	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10141964	0.96[ASN][1000 genomes]
rs17409829	0.82[JPT][hapmap]
rs1957020	0.82[JPT][hapmap]
rs1957022	0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs28504132	0.93[ASN][1000 genomes]
rs28594748	0.93[ASN][1000 genomes]
rs3784192	0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs3784194	0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs3825751	0.98[ASN][1000 genomes]
rs6571515	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571516	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571519	0.94[ASN][1000 genomes]
rs6571520	0.93[ASN][1000 genomes]
rs6571521	0.89[ASN][1000 genomes]
rs7140949	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7146913	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153204	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157869	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs8010075	0.91[ASN][1000 genomes]
rs8013186	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941744	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
2	chr14:32898000-32906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
4	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
5	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
6	chr14:32899600-32906200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:32899800-32907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:32900000-32905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:32901800-32907800	Active TSS	Aorta	Aorta
10	chr14:32902800-32905800	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr14:32902800-32907200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:32902800-32907400	Weak transcription	Fetal Heart	heart
13	chr14:32903000-32906200	Weak transcription	Right Ventricle	heart
14	chr14:32903000-32907000	Weak transcription	Small Intestine	intestine
15	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
16	chr14:32903400-32906400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:32903400-32908200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:32903600-32908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:32903800-32906400	Weak transcription	Left Ventricle	heart
20	chr14:32903800-32907200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:32904200-32905600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:32904200-32905800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:32904400-32905200	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:32904400-32905400	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:32904400-32905400	Weak transcription	Brain Substantia Nigra	brain
26	chr14:32904400-32907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:32904400-32908000	Weak transcription	Ovary	ovary
28	chr14:32904400-32908600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:32904600-32905600	Weak transcription	Brain Anterior Caudate	brain
30	chr14:32904600-32905600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:32904600-32906800	Weak transcription	GM12878-XiMat	blood
32	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
33	chr14:32904800-32905600	Weak transcription	Brain Inferior Temporal Lobe	brain

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