Variant report

Variant	rs10141964
Chromosome Location	chr14:32922601-32922602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32901776..32904730-chr14:32922169..32924745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10138310	0.95[ASN][1000 genomes]
rs10141958	1.00[ASN][1000 genomes]
rs11628508	0.80[AMR][1000 genomes]
rs1957022	0.90[ASN][1000 genomes]
rs28504132	0.93[ASN][1000 genomes]
rs28594748	0.93[ASN][1000 genomes]
rs3784190	0.96[ASN][1000 genomes]
rs3784192	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784194	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825751	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571515	0.97[ASN][1000 genomes]
rs6571516	0.97[ASN][1000 genomes]
rs6571519	0.93[ASN][1000 genomes]
rs6571520	0.92[ASN][1000 genomes]
rs6571521	0.88[ASN][1000 genomes]
rs7140949	0.95[ASN][1000 genomes]
rs7146913	0.97[ASN][1000 genomes]
rs7153204	0.95[ASN][1000 genomes]
rs8010075	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013186	0.97[ASN][1000 genomes]
rs941744	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:32919200-32926400	Weak transcription	NHDF-Ad	bronchial
4	chr14:32919400-32923200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:32919400-32923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:32919600-32926800	Weak transcription	Aorta	Aorta
7	chr14:32919800-32926200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:32920800-32923200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:32920800-32923200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:32920800-32923200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:32920800-32923400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:32920800-32926200	Weak transcription	Brain Anterior Caudate	brain
13	chr14:32920800-32926600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:32920800-32930200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:32921600-32923200	Enhancers	Fetal Heart	heart
16	chr14:32921600-32926400	Weak transcription	Brain Substantia Nigra	brain
17	chr14:32921800-32923800	Enhancers	Fetal Lung	lung
18	chr14:32922200-32923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:32922200-32923800	Enhancers	Colon Smooth Muscle	Colon
20	chr14:32922400-32923200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:32922400-32923800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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