Variant report

Variant	rs10138310
Chromosome Location	chr14:32912092-32912093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130628	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10141958	0.87[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141964	0.95[ASN][1000 genomes]
rs1951189	0.82[JPT][hapmap]
rs1957020	0.91[JPT][hapmap]
rs1957022	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs28504132	0.94[ASN][1000 genomes]
rs28594748	0.94[ASN][1000 genomes]
rs3784190	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784191	0.87[ASW][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs3784192	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3784194	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3825751	0.98[ASN][1000 genomes]
rs6571515	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6571516	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571519	0.95[ASN][1000 genomes]
rs6571520	0.93[ASN][1000 genomes]
rs6571521	0.90[ASN][1000 genomes]
rs7140949	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146913	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153204	0.98[ASN][1000 genomes]
rs7157869	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs8010075	0.91[ASN][1000 genomes]
rs8013186	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941744	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
3	chr14:32908600-32912600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:32908600-32912600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:32908600-32912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:32908800-32912800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:32908800-32913000	Weak transcription	Brain Anterior Caudate	brain
11	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
12	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:32909000-32919000	Weak transcription	Ovary	ovary
14	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:32911800-32912800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:32911800-32912800	Weak transcription	Brain Substantia Nigra	brain
17	chr14:32911800-32918800	Weak transcription	Aorta	Aorta

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