Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10138310	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10141958	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141964	0.97[ASN][1000 genomes]
rs1957022	0.94[ASN][1000 genomes]
rs28504132	0.96[ASN][1000 genomes]
rs28594748	0.96[ASN][1000 genomes]
rs3784190	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784191	0.86[AFR][1000 genomes]
rs3784192	1.00[ASN][1000 genomes]
rs3784194	0.99[ASN][1000 genomes]
rs3825751	1.00[ASN][1000 genomes]
rs6571516	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571519	0.97[ASN][1000 genomes]
rs6571520	0.95[ASN][1000 genomes]
rs6571521	0.91[ASN][1000 genomes]
rs7140949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146913	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153204	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157869	0.81[AMR][1000 genomes]
rs8010075	0.93[ASN][1000 genomes]
rs8013186	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941744	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv983766	chr14:32914108-32915963	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32908600-32915600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:32908600-32920200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:32908600-32920200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:32908800-32919000	Weak transcription	Right Ventricle	heart
5	chr14:32909000-32919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:32909000-32919000	Weak transcription	Ovary	ovary
7	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:32911800-32918800	Weak transcription	Aorta	Aorta
9	chr14:32914200-32916200	Weak transcription	Brain Anterior Caudate	brain
10	chr14:32914400-32916200	Weak transcription	Fetal Lung	lung
11	chr14:32914400-32916400	Weak transcription	Brain Substantia Nigra	brain
12	chr14:32914400-32919200	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:32914600-32916200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:32914600-32917200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:32915200-32916200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search: