Variant report

Variant	rs7153204
Chromosome Location	chr14:32906954-32906955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32902258..32904086-chr14:32906783..32908979,2	MCF-7	breast:
2	chr14:32904805..32907044-chr14:32912788..32914378,2	K562	blood:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10138310	0.98[ASN][1000 genomes]
rs10141958	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141964	0.95[ASN][1000 genomes]
rs1957022	0.90[ASN][1000 genomes]
rs28504132	0.93[ASN][1000 genomes]
rs28594748	0.93[ASN][1000 genomes]
rs3784190	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784192	0.97[ASN][1000 genomes]
rs3784194	0.96[ASN][1000 genomes]
rs3825751	0.97[ASN][1000 genomes]
rs6571515	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571516	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571519	0.93[ASN][1000 genomes]
rs6571520	0.92[ASN][1000 genomes]
rs6571521	0.88[ASN][1000 genomes]
rs7140949	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146913	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157869	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8010075	0.90[ASN][1000 genomes]
rs8013186	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs941744	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
2	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
3	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
4	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
5	chr14:32899800-32907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:32901800-32907800	Active TSS	Aorta	Aorta
7	chr14:32902800-32907200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32902800-32907400	Weak transcription	Fetal Heart	heart
9	chr14:32903000-32907000	Weak transcription	Small Intestine	intestine
10	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
11	chr14:32903400-32908200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:32903600-32908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:32903800-32907200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:32904400-32907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:32904400-32908000	Weak transcription	Ovary	ovary
16	chr14:32904400-32908600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
18	chr14:32905400-32908400	Enhancers	Brain Substantia Nigra	brain
19	chr14:32905600-32907400	Enhancers	Colon Smooth Muscle	Colon
20	chr14:32905600-32908000	Enhancers	Brain Anterior Caudate	brain
21	chr14:32905600-32908600	Enhancers	Brain Angular Gyrus	brain
22	chr14:32905800-32908200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:32905800-32908600	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:32906000-32908600	Enhancers	Brain Hippocampus Middle	brain
25	chr14:32906200-32908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:32906400-32907200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:32906400-32908600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:32906400-32909000	Enhancers	Left Ventricle	heart
29	chr14:32906600-32908400	Weak transcription	Right Ventricle	heart
30	chr14:32906600-32908600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr14:32906800-32907200	Enhancers	GM12878-XiMat	blood

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