Variant report

Variant	rs10141958
Chromosome Location	chr14:32922582-32922583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32901776..32904730-chr14:32922169..32924745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130628	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10138310	0.87[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141964	1.00[ASN][1000 genomes]
rs1951189	0.82[JPT][hapmap]
rs1957020	0.91[JPT][hapmap]
rs1957022	0.95[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs28504132	0.93[ASN][1000 genomes]
rs28594748	0.93[ASN][1000 genomes]
rs3784190	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3784191	1.00[ASW][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs3784192	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3784194	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3825751	0.97[ASN][1000 genomes]
rs6571515	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571519	0.93[ASN][1000 genomes]
rs6571520	0.92[ASN][1000 genomes]
rs6571521	0.88[ASN][1000 genomes]
rs7140949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7146913	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153204	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157869	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs8010075	0.90[ASN][1000 genomes]
rs8013186	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs941744	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:32919200-32926400	Weak transcription	NHDF-Ad	bronchial
4	chr14:32919400-32923200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:32919400-32923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:32919600-32926800	Weak transcription	Aorta	Aorta
7	chr14:32919800-32926200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:32920800-32923200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:32920800-32923200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:32920800-32923200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:32920800-32923400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:32920800-32926200	Weak transcription	Brain Anterior Caudate	brain
13	chr14:32920800-32926600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:32920800-32930200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:32921600-32923200	Enhancers	Fetal Heart	heart
16	chr14:32921600-32926400	Weak transcription	Brain Substantia Nigra	brain
17	chr14:32921800-32923800	Enhancers	Fetal Lung	lung
18	chr14:32922200-32923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:32922200-32923800	Enhancers	Colon Smooth Muscle	Colon
20	chr14:32922400-32923200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:32922400-32923800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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