Variant report

Variant	rs10130628
Chromosome Location	chr14:32908548-32908549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32902258..32904086-chr14:32906783..32908979,2	MCF-7	breast:
2	chr14:32908071..32910208-chr14:32913357..32914973,2	K562	blood:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10138310	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10139831	0.93[ASN][1000 genomes]
rs10141958	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11628508	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17409829	0.91[JPT][hapmap]
rs1957015	0.86[JPT][hapmap]
rs1957021	0.83[ASN][1000 genomes]
rs1957022	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs2224430	0.84[JPT][hapmap]
rs3784188	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3784190	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3784191	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs3784192	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs3784193	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784194	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4981969	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6571522	0.81[ASN][1000 genomes]
rs6571523	0.81[ASN][1000 genomes]
rs6571524	0.81[ASN][1000 genomes]
rs6571525	0.81[ASN][1000 genomes]
rs7140949	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7143943	0.82[ASN][1000 genomes]
rs7149947	0.91[CHB][hapmap]
rs7157869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8013186	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs941744	0.83[JPT][hapmap]
rs941746	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
2	chr14:32903000-32910200	Weak transcription	Esophagus	oesophagus
3	chr14:32903600-32908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:32904400-32908600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:32904600-32913400	Weak transcription	Brain Germinal Matrix	brain
6	chr14:32905600-32908600	Enhancers	Brain Angular Gyrus	brain
7	chr14:32905800-32908600	Enhancers	Brain Cingulate Gyrus	brain
8	chr14:32906000-32908600	Enhancers	Brain Hippocampus Middle	brain
9	chr14:32906400-32908600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32906400-32909000	Enhancers	Left Ventricle	heart
11	chr14:32906600-32908600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:32907200-32908600	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:32907200-32908600	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:32907400-32908600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:32907400-32909000	Enhancers	Fetal Heart	heart
16	chr14:32907800-32908600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr14:32907800-32908600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:32907800-32910000	Weak transcription	Aorta	Aorta
19	chr14:32908000-32908600	Enhancers	Small Intestine	intestine
20	chr14:32908000-32909000	Enhancers	Ovary	ovary
21	chr14:32908200-32908600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr14:32908200-32908600	Enhancers	Fetal Muscle Leg	muscle
23	chr14:32908200-32908800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:32908200-32908800	Genic enhancers	Brain Anterior Caudate	brain
25	chr14:32908200-32908800	Enhancers	Right Atrium	heart
26	chr14:32908200-32909000	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:32908400-32908600	Enhancers	Psoas Muscle	Psoas
28	chr14:32908400-32908600	Genic enhancers	Right Ventricle	heart
29	chr14:32908400-32908800	Genic enhancers	Brain Substantia Nigra	brain
30	chr14:32908400-32908800	Enhancers	Colon Smooth Muscle	Colon
31	chr14:32908400-32909000	Strong transcription	Fetal Brain Female	brain
32	chr14:32908400-32909000	Enhancers	Stomach Smooth Muscle	stomach

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