Variant report

Variant	rs10140136
Chromosome Location	chr14:37488188-37488189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10047907	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10047908	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10129311	0.96[EUR][1000 genomes]
rs10131531	0.84[EUR][1000 genomes]
rs10133042	0.81[CEU][hapmap]
rs10134363	0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10136164	0.91[EUR][1000 genomes]
rs10136755	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10137539	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10137553	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10137595	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10137611	0.81[CEU][hapmap]
rs10139726	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10140373	1.00[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs10143832	0.80[ASN][1000 genomes]
rs10148080	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10148097	0.83[EUR][1000 genomes]
rs10148311	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10148351	0.83[EUR][1000 genomes]
rs10148406	0.96[EUR][1000 genomes]
rs10148426	0.84[EUR][1000 genomes]
rs10483486	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs11156932	0.81[EUR][1000 genomes]
rs11848427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12433348	0.86[CEU][hapmap]
rs12879089	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12879259	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs12883863	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12889779	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12893236	0.86[CHB][hapmap]
rs12894067	0.86[CEU][hapmap]
rs12894251	0.81[EUR][1000 genomes]
rs12897101	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1467484	0.83[EUR][1000 genomes]
rs1467485	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1467486	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1467487	0.83[EUR][1000 genomes]
rs1467488	0.82[EUR][1000 genomes]
rs1467489	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1467490	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1467491	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs1467492	0.84[EUR][1000 genomes]
rs1467493	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1535239	0.80[ASN][1000 genomes]
rs1555333	0.83[EUR][1000 genomes]
rs17106133	0.81[EUR][1000 genomes]
rs17106164	0.86[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1950816	0.95[CEU][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs1956422	0.86[CEU][hapmap]
rs1956425	0.81[CEU][hapmap]
rs2022726	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057271	0.94[EUR][1000 genomes]
rs2180600	0.81[CEU][hapmap]
rs2415378	0.86[CEU][hapmap]
rs28411825	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28437272	0.81[EUR][1000 genomes]
rs28796569	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28826308	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35844261	0.81[EUR][1000 genomes]
rs4328351	0.84[EUR][1000 genomes]
rs4408459	0.81[CEU][hapmap]
rs56113646	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59676376	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6571773	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6571774	0.81[EUR][1000 genomes]
rs6571775	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6571776	0.86[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs6571777	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6571778	0.84[CEU][hapmap]
rs6571780	0.86[CEU][hapmap]
rs7141528	0.86[CEU][hapmap]
rs7142225	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs714268	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7143414	0.86[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs7145475	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7149154	1.00[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7149490	0.81[CEU][hapmap]
rs7151191	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7153530	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7160964	0.81[EUR][1000 genomes]
rs7359049	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7359050	0.83[EUR][1000 genomes]
rs7359156	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8004339	0.84[EUR][1000 genomes]
rs8005022	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs8008894	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs8009178	0.86[CEU][hapmap]
rs8011174	0.95[CEU][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs8011715	0.81[CEU][hapmap]
rs8014914	0.80[ASN][1000 genomes]
rs8015845	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs8016428	0.81[EUR][1000 genomes]
rs8016558	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8016567	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs8022248	0.81[EUR][1000 genomes]
rs9743502	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9743793	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9806037	1.00[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10140136	PPP2R3C	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37467000-37488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:37487600-37488800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:37487800-37488400	Enhancers	Left Ventricle	heart

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