Variant report

Variant	rs8015845
Chromosome Location	chr14:37522816-37522817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37517069..37519596-chr14:37522769..37524947,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10133042	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10133820	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10135756	0.85[EUR][1000 genomes]
rs10136755	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136870	0.85[EUR][1000 genomes]
rs10137539	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10137611	0.81[CEU][hapmap];0.83[GIH][hapmap];0.85[EUR][1000 genomes]
rs10139726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140136	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10143832	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848427	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12879089	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12879259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12883863	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs12889779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12892230	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12892728	0.85[EUR][1000 genomes]
rs12893236	0.86[CHB][hapmap]
rs12897058	0.85[EUR][1000 genomes]
rs12897101	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13353107	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1467491	0.81[CEU][hapmap]
rs1467493	0.81[CEU][hapmap]
rs1535239	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17106164	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17554224	1.00[JPT][hapmap]
rs1956425	0.81[CEU][hapmap]
rs2022726	0.80[ASN][1000 genomes]
rs2180600	0.81[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2415374	0.84[EUR][1000 genomes]
rs2415375	0.84[EUR][1000 genomes]
rs2415376	0.84[EUR][1000 genomes]
rs28466578	0.84[EUR][1000 genomes]
rs34592617	0.85[EUR][1000 genomes]
rs34781881	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35341876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36105433	0.85[EUR][1000 genomes]
rs4408459	0.81[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs58079830	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6571776	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6571777	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs714269	0.85[EUR][1000 genomes]
rs7143414	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145475	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7149154	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149490	0.81[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs7151191	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7359156	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs8008894	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008912	0.82[EUR][1000 genomes]
rs8011715	0.81[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs8014914	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8016558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8016567	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9919903	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37520400-37523200	Weak transcription	HSMMtube	muscle
2	chr14:37521000-37525800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:37521600-37525800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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