Variant report

Variant	rs10145223
Chromosome Location	chr14:32701467-32701468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1007279	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs17098631	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs17388327	0.88[MEX][hapmap]
rs1951680	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145676	0.92[ASN][1000 genomes]
rs4981953	0.96[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs4981956	0.81[CEU][hapmap]
rs7144586	0.96[CEU][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7155347	0.91[EUR][1000 genomes]
rs7160483	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7161530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161546	0.88[EUR][1000 genomes]
rs8011923	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012126	0.81[EUR][1000 genomes]
rs8014494	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9972142	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32695800-32701800	Weak transcription	Small Intestine	intestine
2	chr14:32698400-32702600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:32698400-32702800	Enhancers	NHEK	skin
4	chr14:32698400-32703000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:32698400-32703800	Enhancers	Hela-S3	cervix
6	chr14:32698600-32702800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:32698600-32703000	Enhancers	HMEC	breast
8	chr14:32698800-32701800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr14:32699800-32702000	Weak transcription	Right Atrium	heart
10	chr14:32700800-32702800	Weak transcription	Osteobl	bone
11	chr14:32701000-32702000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:32701000-32702200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:32701000-32702800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:32701200-32713600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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