Variant report

Variant	rs7161546
Chromosome Location	chr14:32719503-32719504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1007279	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145223	0.88[EUR][1000 genomes]
rs1951680	0.88[EUR][1000 genomes]
rs4981953	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4981956	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6571502	0.86[AMR][1000 genomes]
rs6571507	0.82[AMR][1000 genomes]
rs7144586	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7155347	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7160483	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161530	0.87[EUR][1000 genomes]
rs8011923	0.88[EUR][1000 genomes]
rs8012126	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8014494	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8023125	0.82[AMR][1000 genomes]
rs9972142	0.85[EUR][1000 genomes]
rs9972143	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32715200-32727600	Weak transcription	Psoas Muscle	Psoas
2	chr14:32717400-32719800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:32718400-32719600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:32718400-32720000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:32718400-32720200	Enhancers	NHEK	skin
6	chr14:32718600-32720000	Enhancers	HMEC	breast
7	chr14:32718800-32719600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32718800-32721000	Weak transcription	Fetal Heart	heart
9	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
10	chr14:32719400-32719600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr14:32719400-32721000	Weak transcription	HepG2	liver
12	chr14:32719400-32727800	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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