Variant report

Variant	rs1951680
Chromosome Location	chr14:32699397-32699398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32542593..32543321-chr14:32699236..32699968,2	MCF-7	breast:
2	chr14:32698519..32700470-chr14:32701311..32703904,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1007279	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs10145223	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098631	1.00[CHB][hapmap]
rs4145676	0.92[ASN][1000 genomes]
rs4981953	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs4981956	0.81[CEU][hapmap]
rs7144586	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7155347	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7160483	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7161530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161546	0.88[EUR][1000 genomes]
rs8011923	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012126	0.81[EUR][1000 genomes]
rs8014494	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9972142	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32691400-32699800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:32694600-32700000	Weak transcription	Pancreas	Pancrea
3	chr14:32694800-32700000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:32695000-32699400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:32695000-32699400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:32695800-32701800	Weak transcription	Small Intestine	intestine
7	chr14:32696000-32699800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:32696000-32700000	Weak transcription	Right Ventricle	heart
9	chr14:32696600-32699600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:32696600-32699800	Weak transcription	Left Ventricle	heart
11	chr14:32697600-32701000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:32698400-32702600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:32698400-32702800	Enhancers	NHEK	skin
14	chr14:32698400-32703000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:32698400-32703800	Enhancers	Hela-S3	cervix
16	chr14:32698600-32699800	Enhancers	Osteobl	bone
17	chr14:32698600-32700600	Enhancers	NHDF-Ad	bronchial
18	chr14:32698600-32701000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:32698600-32701000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:32698600-32702800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:32698600-32703000	Enhancers	HMEC	breast
22	chr14:32698800-32700000	Enhancers	Fetal Heart	heart
23	chr14:32698800-32700600	Enhancers	HSMM	muscle
24	chr14:32698800-32700800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr14:32698800-32700800	Enhancers	NH-A	brain
26	chr14:32698800-32701000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:32698800-32701000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:32698800-32701800	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr14:32699000-32699800	Enhancers	Right Atrium	heart
30	chr14:32699000-32700400	Enhancers	Aorta	Aorta
31	chr14:32699000-32700400	Flanking Active TSS	A549	lung
32	chr14:32699000-32700600	Enhancers	Colon Smooth Muscle	Colon
33	chr14:32699000-32700600	Enhancers	NHLF	lung
34	chr14:32699000-32700800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:32699000-32700800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:32699000-32701000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr14:32699200-32700000	Enhancers	Liver	Liver
38	chr14:32699200-32700400	Enhancers	Rectal Smooth Muscle	rectum
39	chr14:32699200-32700800	Enhancers	Skeletal Muscle Male	skeletal muscle

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