Variant report

Variant	rs10154838
Chromosome Location	chr3:21592858-21592859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28822992	1.00[EUR][1000 genomes]
rs57852338	1.00[EUR][1000 genomes]
rs60086939	1.00[EUR][1000 genomes]
rs60359281	1.00[EUR][1000 genomes]
rs73044482	1.00[AFR][1000 genomes]
rs73819522	1.00[EUR][1000 genomes]
rs7619515	1.00[EUR][1000 genomes]
rs9811766	1.00[EUR][1000 genomes]
rs9826648	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9831866	1.00[EUR][1000 genomes]
rs9849669	1.00[EUR][1000 genomes]
rs9851283	1.00[AFR][1000 genomes]
rs9852842	1.00[EUR][1000 genomes]
rs9854777	1.00[AFR][1000 genomes]
rs9874764	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21585000-21601600	Weak transcription	Fetal Stomach	stomach
3	chr3:21585800-21602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
6	chr3:21591600-21594000	Weak transcription	Osteobl	bone
7	chr3:21592400-21593000	Enhancers	K562	blood
8	chr3:21592600-21593200	Enhancers	Fetal Kidney	kidney
9	chr3:21592800-21593200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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