Variant report

Variant	rs28822992
Chromosome Location	chr3:21602548-21602549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10154838	1.00[EUR][1000 genomes]
rs17009099	0.86[ASN][1000 genomes]
rs57852338	1.00[EUR][1000 genomes]
rs60086939	1.00[EUR][1000 genomes]
rs60359281	1.00[EUR][1000 genomes]
rs73137030	0.86[ASN][1000 genomes]
rs73137033	0.86[ASN][1000 genomes]
rs73137035	0.86[ASN][1000 genomes]
rs73137042	0.80[ASN][1000 genomes]
rs73137046	0.86[ASN][1000 genomes]
rs73819522	1.00[EUR][1000 genomes]
rs7619515	1.00[EUR][1000 genomes]
rs9811766	1.00[EUR][1000 genomes]
rs9826648	1.00[EUR][1000 genomes]
rs9831866	1.00[EUR][1000 genomes]
rs9849669	1.00[EUR][1000 genomes]
rs9852842	1.00[EUR][1000 genomes]
rs9874764	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
3	chr3:21593000-21606800	Weak transcription	K562	blood
4	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
5	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:21601600-21602800	Strong transcription	Fetal Lung	lung
9	chr3:21601600-21603000	ZNF genes & repeats	Fetal Stomach	stomach
10	chr3:21602000-21603000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:21602200-21602800	Strong transcription	Fetal Muscle Leg	muscle
12	chr3:21602400-21602800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:21602400-21603000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:21602400-21603200	Enhancers	Left Ventricle	heart
15	chr3:21602400-21603200	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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