Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10154838	1.00[EUR][1000 genomes]
rs17009055	1.00[AMR][1000 genomes]
rs17009064	1.00[AMR][1000 genomes]
rs17009069	1.00[AMR][1000 genomes]
rs28822992	1.00[EUR][1000 genomes]
rs3911497	1.00[AMR][1000 genomes]
rs56165442	1.00[AMR][1000 genomes]
rs56330701	1.00[AMR][1000 genomes]
rs56413975	1.00[AMR][1000 genomes]
rs57852338	1.00[EUR][1000 genomes]
rs58049694	1.00[AMR][1000 genomes]
rs58497066	1.00[AMR][1000 genomes]
rs58525325	1.00[AMR][1000 genomes]
rs60086939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60352620	1.00[AMR][1000 genomes]
rs60359281	1.00[EUR][1000 genomes]
rs61350442	1.00[AMR][1000 genomes]
rs73819308	1.00[AMR][1000 genomes]
rs73819309	1.00[AMR][1000 genomes]
rs73819310	1.00[AMR][1000 genomes]
rs73819961	1.00[AMR][1000 genomes]
rs7619515	1.00[EUR][1000 genomes]
rs9811766	1.00[EUR][1000 genomes]
rs9826648	1.00[EUR][1000 genomes]
rs9831866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852842	1.00[EUR][1000 genomes]
rs9874764	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:21584000-21586400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr3:21584200-21586000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:21584200-21587800	Active TSS	K562	blood
6	chr3:21584400-21586000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:21584400-21586000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:21585000-21601600	Weak transcription	Fetal Stomach	stomach
9	chr3:21585200-21586000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:21585200-21586600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:21585200-21589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:21585400-21586000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr3:21585400-21586200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr3:21585400-21588600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:21585600-21585800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr3:21585600-21585800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:21585600-21586600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:21585600-21586800	Enhancers	HUES48 Cell Line	embryonic stem cell

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