Variant report

Variant	rs17009069
Chromosome Location	chr3:21622358-21622359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17009055	1.00[AMR][1000 genomes]
rs17009064	1.00[AMR][1000 genomes]
rs17009110	0.90[AFR][1000 genomes]
rs3911497	1.00[AMR][1000 genomes]
rs56165442	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56330701	1.00[AMR][1000 genomes]
rs56413975	1.00[AMR][1000 genomes]
rs58049694	1.00[AMR][1000 genomes]
rs58497066	1.00[AMR][1000 genomes]
rs58525325	1.00[AMR][1000 genomes]
rs60086939	1.00[AMR][1000 genomes]
rs60352620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350442	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766667	1.00[AMR][1000 genomes]
rs73819308	1.00[AMR][1000 genomes]
rs73819309	1.00[AMR][1000 genomes]
rs73819310	1.00[AMR][1000 genomes]
rs73819522	1.00[AMR][1000 genomes]
rs73819961	1.00[AMR][1000 genomes]
rs73822026	1.00[AMR][1000 genomes]
rs9811558	1.00[AMR][1000 genomes]
rs9831866	1.00[AMR][1000 genomes]
rs9839117	1.00[AMR][1000 genomes]
rs9849669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
2	chr3:21618400-21643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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