Variant report

Variant	rs56413975
Chromosome Location	chr3:21605041-21605042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17009055	1.00[AMR][1000 genomes]
rs17009064	1.00[AMR][1000 genomes]
rs17009069	1.00[AMR][1000 genomes]
rs3911497	1.00[AMR][1000 genomes]
rs56165442	1.00[AMR][1000 genomes]
rs56330701	1.00[AMR][1000 genomes]
rs58049694	1.00[AMR][1000 genomes]
rs58497066	1.00[AMR][1000 genomes]
rs58525325	1.00[AMR][1000 genomes]
rs60086939	1.00[AMR][1000 genomes]
rs60352620	1.00[AMR][1000 genomes]
rs61350442	1.00[AMR][1000 genomes]
rs73819308	1.00[AMR][1000 genomes]
rs73819309	1.00[AMR][1000 genomes]
rs73819310	1.00[AMR][1000 genomes]
rs73819522	1.00[AMR][1000 genomes]
rs73819961	1.00[AMR][1000 genomes]
rs9831866	1.00[AMR][1000 genomes]
rs9849669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21593000-21606800	Weak transcription	K562	blood
2	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
3	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:21603000-21606200	Weak transcription	Fetal Stomach	stomach
7	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
8	chr3:21604000-21608200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:21604400-21605400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:21604600-21606600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:21604800-21605600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:21605000-21605200	Genic enhancers	Aorta	Aorta
13	chr3:21605000-21605600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:21605000-21605600	Strong transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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