Variant report

Variant	rs56165442
Chromosome Location	chr3:21601968-21601969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17009055	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17009069	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3911497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56330701	1.00[AMR][1000 genomes]
rs56413975	1.00[AMR][1000 genomes]
rs58049694	1.00[AMR][1000 genomes]
rs58497066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58525325	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60086939	1.00[AMR][1000 genomes]
rs60352620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61350442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819522	1.00[AMR][1000 genomes]
rs73819961	1.00[AMR][1000 genomes]
rs9831866	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9849669	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21585800-21602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
5	chr3:21593000-21606800	Weak transcription	K562	blood
6	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
7	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:21601600-21602200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:21601600-21602800	Strong transcription	Fetal Lung	lung
12	chr3:21601600-21603000	ZNF genes & repeats	Fetal Stomach	stomach
13	chr3:21601800-21602200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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