Variant report

Variant	rs57852338
Chromosome Location	chr3:21589117-21589118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10154838	1.00[EUR][1000 genomes]
rs28822992	1.00[EUR][1000 genomes]
rs60086939	1.00[EUR][1000 genomes]
rs60359281	1.00[EUR][1000 genomes]
rs73819522	1.00[EUR][1000 genomes]
rs7619515	1.00[EUR][1000 genomes]
rs9811766	1.00[EUR][1000 genomes]
rs9826648	1.00[EUR][1000 genomes]
rs9831866	1.00[EUR][1000 genomes]
rs9849669	1.00[EUR][1000 genomes]
rs9852842	1.00[EUR][1000 genomes]
rs9874764	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21585000-21601600	Weak transcription	Fetal Stomach	stomach
3	chr3:21585200-21589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:21585800-21602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:21586000-21589400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:21587600-21589800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:21588600-21590800	Weak transcription	K562	blood
8	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
10	chr3:21588800-21589200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:21589000-21590600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links