Variant report

Variant	rs10158709
Chromosome Location	chr1:63348942-63348943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10047193	1.00[AMR][1000 genomes]
rs10159254	0.80[YRI][hapmap]
rs56708934	1.00[AMR][1000 genomes]
rs58334852	1.00[AMR][1000 genomes]
rs74077143	1.00[AMR][1000 genomes]
rs74078344	1.00[AMR][1000 genomes]
rs74078356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078366	1.00[AMR][1000 genomes]
rs74078367	1.00[AMR][1000 genomes]
rs74078369	1.00[AMR][1000 genomes]
rs74078371	1.00[AMR][1000 genomes]
rs74078372	1.00[AMR][1000 genomes]
rs74078378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63346800-63349600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:63346800-63349600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:63347000-63349000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:63347000-63349600	Enhancers	Brain Germinal Matrix	brain
5	chr1:63348000-63350600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:63348400-63349400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:63348400-63349400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:63348400-63349600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:63348400-63353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:63348600-63349600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:63348600-63350000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:63348600-63350000	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links