Variant report
| Variant | rs74078378 |
|---|---|
| Chromosome Location | chr1:63364968-63364969 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:63363718..63366869-chr1:63368181..63370923,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000237163 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10047193 | 1.00[AMR][1000 genomes] |
| rs10158709 | 1.00[AMR][1000 genomes] |
| rs56708934 | 1.00[AMR][1000 genomes] |
| rs58334852 | 1.00[AMR][1000 genomes] |
| rs74077143 | 1.00[AMR][1000 genomes] |
| rs74078344 | 1.00[AMR][1000 genomes] |
| rs74078356 | 1.00[AMR][1000 genomes] |
| rs74078361 | 1.00[AMR][1000 genomes] |
| rs74078362 | 1.00[AMR][1000 genomes] |
| rs74078363 | 1.00[AMR][1000 genomes] |
| rs74078364 | 1.00[AMR][1000 genomes] |
| rs74078366 | 1.00[AMR][1000 genomes] |
| rs74078367 | 1.00[AMR][1000 genomes] |
| rs74078369 | 1.00[AMR][1000 genomes] |
| rs74078371 | 1.00[AMR][1000 genomes] |
| rs74078372 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830015 | chr1:63261143-63455296 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
