Variant report

Variant	rs74077143
Chromosome Location	chr1:63374341-63374342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10047193	1.00[AMR][1000 genomes]
rs10158709	1.00[AMR][1000 genomes]
rs56708934	1.00[AMR][1000 genomes]
rs58334852	1.00[AMR][1000 genomes]
rs74078344	1.00[AMR][1000 genomes]
rs74078356	1.00[AMR][1000 genomes]
rs74078361	1.00[AMR][1000 genomes]
rs74078362	1.00[AMR][1000 genomes]
rs74078363	1.00[AMR][1000 genomes]
rs74078364	1.00[AMR][1000 genomes]
rs74078366	1.00[AMR][1000 genomes]
rs74078367	1.00[AMR][1000 genomes]
rs74078369	1.00[AMR][1000 genomes]
rs74078371	1.00[AMR][1000 genomes]
rs74078372	1.00[AMR][1000 genomes]
rs74078378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63373600-63374600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:63373600-63374800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:63373800-63374400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:63373800-63374600	Enhancers	Primary T cells from cord blood	blood
5	chr1:63374000-63374400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr1:63374000-63374600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:63374200-63374800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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