Variant report

Variant	rs74078362
Chromosome Location	chr1:63347295-63347296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10047193	1.00[AMR][1000 genomes]
rs10158709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56708934	1.00[AMR][1000 genomes]
rs58334852	1.00[AMR][1000 genomes]
rs74077143	1.00[AMR][1000 genomes]
rs74078344	1.00[AMR][1000 genomes]
rs74078356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078366	1.00[AMR][1000 genomes]
rs74078367	1.00[AMR][1000 genomes]
rs74078369	1.00[AMR][1000 genomes]
rs74078371	1.00[AMR][1000 genomes]
rs74078372	1.00[AMR][1000 genomes]
rs74078378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63345800-63348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:63346800-63349600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:63346800-63349600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:63347000-63347600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:63347000-63349000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:63347000-63349600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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