The 2.0 version of rSNPBase

Variant report

Variant rs58334852
Chromosome Location chr1:63319045-63319046
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:63251000-63327400 Weak transcription Fetal Stomach stomach
2 chr1:63251200-63327400 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:63261600-63326400 Weak transcription Placenta Placenta
4 chr1:63267200-63327000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:63267200-63327400 Weak transcription Colon Smooth Muscle Colon
6 chr1:63268600-63319600 Weak transcription Liver Liver
7 chr1:63270400-63331400 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr1:63271400-63324400 Weak transcription Pancreas Pancrea
9 chr1:63271600-63326800 Weak transcription Aorta Aorta
10 chr1:63271600-63327400 Weak transcription Thymus Thymus
11 chr1:63271800-63324000 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr1:63273600-63322400 Weak transcription Ovary ovary
13 chr1:63273800-63329000 Weak transcription Brain Cingulate Gyrus brain
14 chr1:63275000-63321400 Weak transcription Fetal Intestine Small intestine
15 chr1:63276000-63322800 Weak transcription H1 Cell Line embryonic stem cell
16 chr1:63276400-63322600 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr1:63276600-63323200 Weak transcription Primary T cells fromperipheralblood blood
18 chr1:63276600-63324400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:63276800-63322000 Weak transcription Fetal Muscle Trunk muscle
20 chr1:63276800-63331400 Weak transcription Fetal Lung lung
21 chr1:63277600-63320600 Weak transcription Right Ventricle heart
22 chr1:63277600-63327600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:63278200-63325000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:63278400-63322400 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:63283800-63324000 Weak transcription K562 blood
26 chr1:63287800-63327400 Weak transcription Lung lung
27 chr1:63288800-63319400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:63293400-63319200 Weak transcription Psoas Muscle Psoas
29 chr1:63293800-63324000 Weak transcription Brain Anterior Caudate brain
30 chr1:63294600-63324000 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:63297600-63320400 Weak transcription Brain Hippocampus Middle brain
32 chr1:63298200-63328600 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:63298400-63319600 Weak transcription Fetal Thymus thymus
34 chr1:63298400-63328000 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:63298400-63345800 Weak transcription Left Ventricle heart
36 chr1:63300000-63319400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:63300600-63327200 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr1:63301200-63323800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr1:63302200-63328400 Weak transcription Fetal Brain Male brain
40 chr1:63302600-63324000 Weak transcription Stomach Smooth Muscle stomach
41 chr1:63302600-63324200 Weak transcription Esophagus oesophagus
42 chr1:63303400-63327800 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr1:63306600-63327400 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr1:63306800-63327600 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr1:63308400-63329200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:63309600-63323000 Strong transcription Monocytes-CD14+_RO01746 blood
47 chr1:63310000-63320400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:63310000-63327800 Weak transcription Brain Angular Gyrus brain
49 chr1:63310000-63340600 Weak transcription Brain Substantia Nigra brain
50 chr1:63310200-63324400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015