Variant report

Variant	rs10159730
Chromosome Location	chr10:22854947-22854948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22852845..22855648-chr10:22856213..22858809,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047326	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10741006	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10828314	0.84[EUR][1000 genomes]
rs10828315	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10828316	0.81[ASN][1000 genomes]
rs11013045	0.83[EUR][1000 genomes]
rs11013046	0.85[EUR][1000 genomes]
rs11013048	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12146350	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12241748	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296624	0.84[ASN][1000 genomes]
rs28666940	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35549346	0.87[ASN][1000 genomes]
rs3793752	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747442	0.86[EUR][1000 genomes]
rs4747443	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748810	0.81[ASN][1000 genomes]
rs4748811	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748812	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748813	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748814	0.91[EUR][1000 genomes]
rs4748816	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55867440	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7075634	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7081744	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7082618	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7088318	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7094131	0.91[EUR][1000 genomes]
rs7097972	0.85[EUR][1000 genomes]
rs746203	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7901152	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs943189	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs943190	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
2	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
4	chr10:22825600-22888000	Weak transcription	HMEC	breast
5	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:22836800-22856200	Weak transcription	HepG2	liver
9	chr10:22839000-22859400	Strong transcription	Primary T cells from cord blood	blood
10	chr10:22839400-22855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:22841000-22855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:22841200-22855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:22842400-22855400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:22843800-22855400	Weak transcription	Colonic Mucosa	Colon
16	chr10:22844000-22855200	Weak transcription	Placenta	Placenta
17	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
18	chr10:22844200-22855200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:22844200-22855400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:22844200-22855400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:22844200-22861800	Weak transcription	HSMM	muscle
22	chr10:22844200-22862400	Weak transcription	Stomach Mucosa	stomach
23	chr10:22844200-22876200	Weak transcription	Ovary	ovary
24	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:22844400-22855800	Weak transcription	NH-A	brain
27	chr10:22844400-22856400	Weak transcription	NHLF	lung
28	chr10:22844400-22860600	Weak transcription	Fetal Kidney	kidney
29	chr10:22846200-22857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:22847400-22862400	Strong transcription	Fetal Thymus	thymus
32	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:22848000-22859400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:22849600-22861000	Weak transcription	Fetal Lung	lung
35	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:22849800-22856000	Weak transcription	HSMMtube	muscle
37	chr10:22850000-22855200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:22850000-22855200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:22850400-22855200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:22850400-22855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:22850600-22856400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:22850800-22862400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:22851000-22860000	Weak transcription	Fetal Brain Male	brain
48	chr10:22851000-22861400	Weak transcription	Brain Germinal Matrix	brain
49	chr10:22851600-22859400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:22851800-22857400	Strong transcription	Brain Anterior Caudate	brain

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