Variant report

Variant	rs11013045
Chromosome Location	chr10:22827274-22827275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22630133..22633021-chr10:22824543..22827360,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047326	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs10159730	0.83[EUR][1000 genomes]
rs10430590	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1053454	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741006	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10828314	0.96[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10828315	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10828316	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10828317	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11013046	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[EUR][1000 genomes]
rs11013048	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12146350	0.96[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12241748	0.89[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1830997	0.88[ASN][1000 genomes]
rs1830998	0.88[ASN][1000 genomes]
rs1830999	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1831000	0.88[ASN][1000 genomes]
rs2364115	0.86[ASN][1000 genomes]
rs2885993	0.88[ASN][1000 genomes]
rs3793752	0.83[EUR][1000 genomes]
rs4532931	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4747442	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4747443	0.85[CEU][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748808	0.86[ASN][1000 genomes]
rs4748810	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4748811	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4748812	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748813	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs4748814	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4748816	0.81[EUR][1000 genomes]
rs7075634	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7081744	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs7082618	0.94[EUR][1000 genomes]
rs7088318	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7094131	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7097972	0.89[CEU][hapmap]
rs746203	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7898308	0.84[EUR][1000 genomes]
rs7899156	0.91[ASN][1000 genomes]
rs7901152	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7911272	0.88[ASN][1000 genomes]
rs7912551	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7916922	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7917185	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8341	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs943189	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs943190	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs9783154	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9787624	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11013045	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
2	chr10:22819400-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:22820200-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:22820200-22828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:22820600-22830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:22820800-22828000	Weak transcription	HSMMtube	muscle
7	chr10:22821600-22827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
9	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
10	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr10:22822800-22832600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:22823200-22831200	Strong transcription	Fetal Thymus	thymus
16	chr10:22823400-22828800	Strong transcription	GM12878-XiMat	blood
17	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:22823600-22828200	Weak transcription	NHDF-Ad	bronchial
19	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:22824000-22830000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:22824000-22833800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
25	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:22824200-22830000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:22824200-22831600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:22824200-22832000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:22824200-22833200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:22824200-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:22824400-22827800	Weak transcription	NH-A	brain
35	chr10:22824400-22828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:22824400-22836400	Weak transcription	NHEK	skin
37	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:22824600-22827400	Weak transcription	HepG2	liver
39	chr10:22824600-22836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:22824800-22828800	Genic enhancers	Brain Hippocampus Middle	brain
41	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:22825000-22830000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:22825000-22830800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:22825000-22832400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:22825000-22832800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr10:22825000-22833200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:22825000-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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